An older Sawada and Akasaka Mamoru ride in a car together in the countryside. Akasaka complains that he cannot get a signal on his cellphone and asks to open the window. Sawada complains that it is hot outside but relents. As he sticks his head out of the window, Akasaka remarks, "Just as I remembered. The air here is wonderful."

They arrive and look at an old and fade warning sign on chain-linked fence.
As they drive through a gate, Akasaka remarks that it has nearly been thirty years. Sawada asks what he means, but Akasaka dismisses it. As they continue, Akasaka narrates his identity. He explains that he is a detective in the Tokyo Police Department. The car drives by ruined structures of Hinamizawa. Akasaka continues that he first came to the village in June, 1978. He points Sawada to their destination which is the now decrepit bus stop. He greets and asks how long it has been to Ōishi. As they reacquaint themselves, Akasaka continues his narration that, at the time of his first visit, he was employed by the National Police Agency Public Safety Division (NPA) to investigate the kidnapping of the Minister of Construction's grandson. Through his narration, Akasaka tells Ōishi that he has Yukie to be proud of.

As they continue talking, Akasaka narrates that that was the first time he met
Furude Rika in a flashback.
In the flashback, he recalls her "Nipaa~!" Back in the present, both he and Ōishi look at the place Rika sat. Ōishi remarks that a lot has changed, while Akasaka observes that the village has been quarantined for a very long time. Sawada calls Akasaka, "senpai," and he introduces Sawada as his "kōhai" from college, who served in the Japanese Self-Defense Forces (SDF). Akasaka explains that Sawada was in charge of overseeing the quarantine of Hinamizawa. For this reason, Akasaka asked Sawada to be their guide.
When he is asked where they should start, Akasaka suggests the Onigafuchi Swamp. When they arrive, both are surprised to find it covered in concrete. Sawada explains that they filled it up after the Great Hinamizawa Disaster to prevent further leakage of toxic fumes. Akasaka jumps down to walk on the concrete and remarks that Internet theories suggest it was a UFO landing site: "Photos of this place show up frequently on websites dedicated to mysteries." As Sawada protests that the site was the origin of a sudden release of volcanic gas at the end of June, 1983, Akasaka continues his narrative over flashbacks of what happened. Military vehicles with personel in hazmat suits remove bodies as Akasaka explains that hydrogen sulfide mixed with carbon dioxide gas engulfed the village and killed everyone in a single night. After quarantine, the SDF stationed there filled the swamp.
Ōishi wonders about the swamp being a place to communicate with aliens. Akasaka notes that many Internet sites claim no scientific reason exists for pouring cement into the marsh. Akasaka quotes the Internet that, "the Great Hinamizawa Disaster" is nothing more than a government story to cover up a bio-terrorism attack by aliens.
Sawada finds that ridiculous, but Akasaka responds that some conspiracy buffs claim they have evidence: "A secret file labeled: File No. 34." Sawada asks about it, but Akasaka responds by asking to be taken to the next place.
They arrive at the remains of the Irie Clinic.
Akasaka reminds Sawada of the File No. 34 he mentioned. He explains that it is a memorandum that was written by Takano Miyo, a nurse at the clinic. He reveals that the name "Miyo" comprise of the numbers 3 and 4 written together, and the title of the document comes from her name. He notes that Takano researched the history of the legends of demons in Hinamizawa. As they enter the clinic, Akasaka states that according to her studies, a UFO crashed in Hinamizawa and sank into the Onigafuchi Swamp.
On the UFO were bacteria which infected the villagers. Those infected went insane and were called "demons." According to Takano, the origin of the legend of demons coming from the swamp were the aliens who realized the peril the villagers faced from the infection. They revealed themselves to the villagers, which was the advent of Oyashiro-sama.
With their alien technology, they treated the villagers, but could not cure them of the infection. The villagers praised the aliens as Oyashiro-sama. The aliens used this influence to create rules to prevent the spread of this disease. Since the bacterium only thrived in the natural environment of Hinamizawa, should a host try to leave Hinamizawa, the symptoms of Hinamizawa Syndrome became more severe. The aliens therefore made the rule: do not leave the village.
Sawada asks how that relates to the Great Hinamizawa Disaster. Akasaka explains that the aliens, protected by the Three Great Houses of Hinamizawa, lived for several centuries: "They were worshipped as a holy relic in the Furude Shrine, passed down through the generations." Over time, villagers tolerated the bacteria, and the infection became largely harmless. Both the aliens and symptoms faded from memory. When Sawada concludes that peace returned to the village, Ōishi suggests that there must have been people who did not like this. Akasaka agrees that it was the Three Great Houses. He explains at the site of the Furude Shrine that with the backing of the aliens, the Three Great Houses dominated the village for centuries; however, in more recent times, the villagers who no longer needed the now powerless aliens, started to ignore the Great Houses.
Sawada asks what happened they stand outside the Sonozaki House. Akasaka explains over scenes of what appears to be a laboratory, that the three families began researching ways to restore the power of the bacteria. Sawada complains that his story resembles the plot of a bad movie. The scene focuses on a modern dissection table that has what appears to be old blood in the middle. Akasaka continues that in June 1983, Takano Miyo died under bizarre circumstances which remain unexplained. Further, as if she foresaw her death, she gave her scrapbooks to another person. He identifies that person as "Girl A."
Sawada recognizes "Girl A" as the one who barricaded Hinamizawa Branch School and took the students hostage. Ōishi is surprised that he knows of the case. Sawada explains that he heard of it while he was stationed in Hinamizawa. In a flashback to the incident, Akazaka describes how the girl raved about the Three Great Houses being involved in a bio-terrorism plot. The flashback confirms the identity of "Girl A" as Ryūgū Rena. The day after the incident at the school, the Great Hinamizawa Disaster occurred. Sawada wonders if that is a coincidence; Akasaka admits that he does not know. He notes that a number of inconsistencies remain: the filling of the swamp was pointless; the quarantine lasted far too long; and periodic blood tests of the SDF personnel stationed during the quarantine. Critics claim this was all human experimentation on the SDF to test the infectiousness of the disease. Sawada protests that he underwent such blood test which a "normal salaryman" would have. Akasaka agrees, and Sawada relaxes, but Ōishi raises "a more interesting story."

He explains that some claim that no volcanic gas outbreak happened; the government released the gas.
When Sawada asks for evidence, Akasaka notes a government report released regarding the gas. Hydrogen sulfide would have rusted the metal and damaged the environment; yet, no trace of that exists in Hinamizawa. This raises a severe doubt that a volcanic gas release happened.
Sawada asks his "senpai" if he believes such conspiracy theories as they walk through what appears to be a laboratory facility. Akasaka confesses that he cannot help thinking that some truth lies behind such stories.
Sawada still protests that he is surprised that Akasaka could believe in UFOs, and he reminds that the existence of File No. 34 "is dubious." As Sawada continues his protest, Akasaka opens a briefcase and produces three scrapbooks which he identifies as "File No. 34." Akasaka explains that Takano predicted the Great Hinamizawa Disaster. Ōishi confesses that, at the time, he thought it was all some story Takano made up; however, when he re-read her scrapbooks, there were too many points he could not laugh off: "Well, except for that alien part."
Akasaka announces Ōishi's Theory: in order to restore religious piety, the part about the Three Great Houses studying a pathogen may have been true, and the disaster resulted from a failed experiment. Ōishi explains that the pathogen they researched proved a failure. Rather than control the villagers, it became a lethal pathogen which destroyed the village overnight. While Sawada remains uncertain, Akasaka declares that the disaster was not just a gas release. He reminds that "Girl A" predicted a bio-terrorism attack just before the gas outbreak. Takano and other villagers suffered bizarre deaths. None of that, Akasaka argues, can be explained by a volcanic gas release. He asks Sawada to take him to the next place.